Shopify Agencies

Shopify Agency Management Software

Manage store development from discovery to launch, track theme customization workflows, and bill e-commerce projects efficiently. Built for agencies that build and grow Shopify stores.

From Store Build to Merchant Growth—Streamlined

Stop juggling spreadsheets and scattered communication. AgencyPro centralizes store projects, theme workflows, and merchant billing so you can deliver more stores and retain more clients.

Store Build & Launch Tracking

Organize Shopify projects by phase—store setup, theme install, product import, app integration, and launch. Track store builds from discovery to go-live with clear milestones and timelines.

Theme Customization & Development Workflows

Track time spent on Liquid customization, theme sections, app blocks, and custom features. Separate billing for theme development vs. configuration vs. app setup.

Merchant Client Management

Manage multiple merchants with stores at different lifecycle stages. Track onboarding, ongoing support, and growth projects per merchant in one consolidated portal.

Development & App Integration Hours

Log hours by task type—theme dev, app configuration, product data migration, checkout customization. Accurate time allocation for transparent billing and scope control.

E-commerce Project & Retainer Billing

Handle fixed-price store builds, hourly customization work, monthly Shopify Plus management retainers, and app subscription pass-through. Bill for theme updates and CRO work.

Store Performance & Conversion Reporting

Share conversion metrics, traffic analytics, revenue data, and A/B test results with merchants. Demonstrate ROI from theme optimizations and conversion rate improvements.

Streamline Your Shopify Agency Workflow

See how phase-based tracking, transparent time allocation, and milestone billing help Shopify agencies scale merchant relationships profitably.

1

Merchant Discovery & Store Planning

Define product catalog scope, design preferences, app requirements, and launch timeline. Get merchant approval on scope and budget before development begins

2

Build, Customize & Integrate

Develop storefront, configure theme, import products, set up apps (subscriptions, reviews, loyalty). Track all development time against project budget

3

Launch & Post-Launch Optimization

Coordinate go-live, monitor store performance, share conversion analytics, and implement post-launch optimizations based on real merchant data

4

Bill by Milestone & Retainer

Invoice for completed store builds and theme launches. Bill monthly retainers for ongoing support. Charge for customization work and CRO projects that drive revenue

Shopify Agencies Delivering 45% Faster

Top Shopify partners use AgencyPro to manage store builds, reduce scope creep, and improve merchant satisfaction—with less admin overhead.

45% Faster Store Build Delivery

Organized project phases and clear milestones keep builds on track. Merchants see progress in real-time, reducing status requests and scope confusion.

2.5x Faster Invoice Collection

Professional invoices with online payments. Milestone-based billing tied to deliverables. Merchants pay faster when they see exactly what they're getting.

50% Reduction in Scope Creep

Track all customization requests and change orders separately. Document out-of-scope work clearly. Bill for additions without awkward conversations.

35% Higher Merchant Retention

Transparent communication, performance reports, and 24/7 portal access. Merchants feel informed and valued, leading to renewals and referrals.

40% More Accurate Estimates

Historical time data for theme work, app setup, and migrations. Quote new Shopify projects with confidence based on past delivery patterns.

3x Better Multi-Merchant Visibility

See all merchants at a glance. Track which stores are in build vs. support vs. growth phase. Prioritize work and manage capacity effectively.

45%

Faster store builds

2.5x

Faster payments

92%

Merchant satisfaction

Based on average results reported by agencies using AgencyPro

Frequently Asked Questions

Get answers to common questions about our platform.

How does AgencyPro help Shopify agencies track store development?

AgencyPro lets you organize projects by phase—setup, theme install, product import, app integration, launch. Track time per task type (theme dev, configuration, migration). Merchants see milestones, staging URLs, and progress in their portal. Billing ties directly to deliverable completion.

Can I track theme customization separately from app setup?

Yes! Create categories for Liquid development, theme sections, app blocks, app configuration, product data migration, checkout customization, etc. Set different rates for development vs. configuration. Accurate allocation helps you price fairly and identify profitable vs. low-margin work.

How do I manage multiple Shopify merchants?

Each merchant gets a client record. Create projects per store build, theme refresh, or growth initiative. Track work separately while maintaining one relationship. Filter views by merchant, project phase, or retainer status.

Can I bill for Shopify app subscriptions and pass-through costs?

Track app costs per merchant, add your standard markup, and include in invoices. Common apps like subscriptions, reviews, loyalty, and email—pass through transparently. Merchants see what they're paying for; you get compensated for managing integrations.

How does milestone billing work for Shopify store builds?

Define milestones like "Theme Installed," "Products Imported," "Checkout Configured," "Store Launched." Mark complete when done; generate invoices automatically or on demand. Merchants understand payment timing and deliverables.

Can merchants see store performance and conversion data?

Share conversion rates, traffic metrics, revenue, A/B test results, and optimization recommendations in the portal. Pull from Shopify analytics or connect reporting tools. Merchants access performance data that proves your value.

How do I handle Shopify Plus vs. regular Shopify projects?

Track Shopify Plus implementations (checkout customization, Script Editor, headless) separately with higher rates. Different complexity and support expectations. Use separate project templates for Plus vs. standard stores.

Can I track product import and catalog management work?

Yes! Log time for bulk imports, CSV mapping, product data cleanup, metafields, collections. Separate from theme development for accurate billing. Many agencies undercharge for data work—track it properly.

How do I structure retainer agreements for ongoing Shopify support?

Set monthly retainers for theme updates, app management, seasonal campaigns, and support. Track hours against retainer; bill overages. Include scope (e.g., 10 hours/month) and what's included. Automate retainer invoicing.

Does AgencyPro integrate with Shopify?

AgencyPro is a client portal and project management platform. You manage stores in Shopify; AgencyPro handles project tracking, time logging, client communication, and billing. Share store URLs, reports, and deliverables through the portal.

Start Managing More Shopify Stores Confidently

Join Shopify agencies that use AgencyPro to track development, communicate with merchants, and bill projects with clarity and speed.