Invoicing for E-Commerce Agencies

Invoicing Software for E-Commerce Agencies

E-commerce agencies manage diverse invoicing: one-time store setup and development projects, ongoing product management retainers, and marketing campaign work. AgencyPro automates e-commerce invoicing by tracking setup, development, product management, and marketing separately, ensuring you bill accurately for each service while managing retainer-based product management alongside project work.

43%
reduction in billing questions when e-commerce services are clearly separated
20 hours
monthly time saved on invoice creation and service reconciliation
90%
client satisfaction when invoices show e-commerce development and management value

Invoicing Built for E-Commerce Agencies

Ecommerce agencies face unique billing accuracy and cash flow management challenges that generic tools cannot address. With project-based builds plus monthly optimization retainers, your team of developers, UX designers, CRO specialists, and marketing managers needs a invoicing system that understands managing both technical e-commerce platform work and ongoing marketing optimization across client stores. AgencyPro's invoicing capabilities are designed specifically for service businesses like yours. Rather than forcing you to adapt enterprise software or cobble together freelancer tools, AgencyPro streamlines the process of converting tracked work into professional invoices in a way that matches how ecommerce agencies actually operate. Creating invoices from tracked time, Managing retainer billing cycles, Tracking payment status, Sending automated reminders — all connected to your client projects and team workflows. The impact of poor billing accuracy and cash flow management compounds quickly for ecommerce agencies. When you experience revenue leakage and delayed payments, it affects not just your bottom line but your client relationships and team morale. Key metrics like days sales outstanding, invoice accuracy rate, collection rate determine whether your agency thrives or merely survives. AgencyPro gives you the visibility and automation to optimize these metrics and build a more profitable, scalable operation.

Why E-Commerce Agencies Need Better Invoicing

Agencies building and managing online stores, marketplaces, and digital commerce solutions.

Separating e-commerce store setup and development project billing from ongoing product management and marketing retainers

Tracking billable hours for store configuration, product uploads, and marketing campaigns separately, as clients expect detailed breakdowns

Managing monthly product management retainer invoicing while also billing for additional store enhancements and feature additions

Billing for e-commerce platform fees and third-party tool costs separately from agency service fees

How AgencyPro Solves Invoicing for E-Commerce Agencies

Professional invoicing with time-to-invoice automation, multiple payment gateways, and branded invoice delivery.

Handles both project-based e-commerce development invoicing and retainer-based product management billing in the same system

Tracks store setup, product management, marketing, and development work separately, ensuring each e-commerce service is properly invoiced

Manages retainer invoicing for ongoing product management while also supporting project-based billing for store enhancements

Separates platform fees and third-party tool costs from agency service fees in invoice line items, showing clients where e-commerce budget goes

Key Benefits for E-Commerce Agencies

Eliminate Revenue Leakage

Every billable hour and deliverable is automatically captured and converted into invoice line items. No more missed charges from manual invoice creation or forgotten project expenses.

Accelerate Cash Flow

Automated payment reminders, online payment options, and branded invoice delivery reduce the average time from invoice creation to payment receipt.

Professional Client Communication

Branded invoices with detailed breakdowns of work performed build client trust and reduce billing disputes. Clients see exactly what they are paying for.

Reduce Administrative Overhead

What used to take hours of manual invoice creation, data entry, and follow-up now happens automatically from your tracked project work and retainer agreements.

How It Works

1

Track e-commerce work by service type

Team members log time spent on store setup, product uploads, marketing campaigns, store enhancements, and maintenance, with service types tracked separately

2

Generate project and retainer invoices

Create invoices for e-commerce development projects (setup, enhancements) plus separate retainer invoices for ongoing product management and marketing

3

Send detailed e-commerce invoices

Deliver invoices that show store setup completed, products managed, marketing campaigns executed, and platform services provided, demonstrating comprehensive e-commerce value

Frequently Asked Questions

How does AgencyPro separate e-commerce store setup from ongoing product management?

AgencyPro supports both project-based and retainer billing. Create separate project invoices for e-commerce store setup, theme customization, and initial configuration, then set up monthly retainer invoices for ongoing product management, product uploads, inventory updates, and store maintenance. Clients see clear separation between one-time setup work and ongoing e-commerce management services, avoiding confusion about what's included in each billing type.

Can I bill differently for store development versus product management?

Yes, AgencyPro lets you categorize e-commerce work by type, so store setup, product management, marketing campaigns, and store enhancements can be tracked separately. When creating invoices, include these as distinct line items with different billing rates if needed, showing clients what they pay for different types of e-commerce services. This separation helps justify e-commerce pricing and demonstrates the different skills and time required for development versus ongoing management.

How do I invoice for e-commerce platform fees and third-party tool costs separately?

AgencyPro supports line items beyond time-based billing, so you can add e-commerce platform fees, third-party app subscriptions, payment processing setup, and other tool costs as separate invoice line items. These can be marked as pass-through costs or include markup, giving you flexibility to bill platform and tool costs separately from e-commerce development and management services. This separation helps clients understand what they pay for e-commerce infrastructure versus agency services.

What if clients want to see which products were managed or which marketing campaigns were executed?

AgencyPro invoices support detailed line items and descriptions. When creating invoices from tracked e-commerce work, you can add notes specifying which products were uploaded, which marketing campaigns were executed, which store enhancements were made, or which maintenance tasks were completed. This level of detail helps clients understand the scope of e-commerce work completed and justifies e-commerce service pricing, leading to better client relationships and fewer billing questions.

Automate e-commerce agency invoicing

Join e-commerce agencies using AgencyPro to streamline invoicing from tracked e-commerce work. See how detailed billing improves client relationships and reduces administrative overhead.