Bonsai Alternative for Ecommerce Agencies
Ecommerce agencies handle complex, multi-service engagements — store builds, migration projects, ongoing optimization, ad management, email marketing, and conversion rate optimization, often for the same client simultaneously. Bonsai was built for freelancers sending invoices for simple projects, not for agencies managing multi-service client relationships with overlapping timelines, shared teams, and blended billing models. AgencyPro gives ecommerce agencies the structured engagement management and operational tools to handle this complexity.
If you're a E-commerce agency looking for an alternative to Bonsai, you're not alone. Many E-commerce teams switch when they outgrow Bonsai's capabilities — particularly around built for solo freelancers, not agency teams. AgencyPro is purpose-built for agencies like yours, combining project management, client portals, and billing into one platform.
Why E-commerce Agencies Struggle with Bonsai
Bonsai cannot manage multiple concurrent service lines for a single client — ecommerce agencies running store builds, SEO, and paid ads for one client need separate "projects" with no unified view
No team coordination for cross-functional ecommerce work involving developers, designers, marketers, and strategists on shared client accounts
Bonsai's basic project model can't handle the complexity of ecommerce builds with technical requirements, platform migrations, and launch checklists
Mixed billing models per client (project fees for builds, retainers for ongoing optimization, hourly for ad hoc requests) are unmanageable in Bonsai's simple invoicing
Why E-commerce Agencies Switch to AgencyPro
Multi-Service Client Management
An ecommerce client might have a store redesign project, an ongoing SEO retainer, a PPC management agreement, and periodic CRO audits — all running simultaneously. AgencyPro provides a unified client view with multiple projects and billing structures per account, giving your team a holistic picture that Bonsai's isolated project model cannot create.
Complex Project Management for Builds
Ecommerce store builds involve discovery, platform setup, design, development, data migration, testing, and launch — with dependencies between phases and multiple specialists involved. AgencyPro's phased project management handles this complexity with the structure and dependency tracking that Bonsai's flat task lists completely lack.
Cross-Functional Team Operations
Ecommerce agencies have developers, designers, marketing specialists, and strategists collaborating on client accounts. AgencyPro provides the team assignment, workload balancing, and cross-project allocation views needed to coordinate this cross-functional work effectively.
Flexible Billing Models
Ecommerce agencies need project-based billing for builds, monthly retainers for ongoing services, and hourly rates for ad hoc work — sometimes all for the same client. AgencyPro supports multiple billing structures per client with consolidated invoicing, eliminating the manual billing gymnastics Bonsai requires.
AgencyPro vs Bonsai: Key Feature Comparison
Unified Client Accounts
Manage multiple projects, retainers, and billing structures per ecommerce client in a single consolidated view.
Ecommerce Build Templates
Pre-structured project templates for store builds, platform migrations, and redesigns with phased timelines and task dependencies.
Cross-Functional Team Management
Coordinate developers, designers, and marketers on shared client accounts with workload visibility and role-based assignment.
Multi-Model Billing
Support project fees, retainers, and hourly billing per client with consolidated monthly invoicing across all service lines.
Client Portal
Branded client dashboard showing build progress, retainer utilization, pending approvals, and all active service lines.
Revenue & Margin Analytics
Track profitability per client, per service line, and per project with blended margins across multi-service engagements.
Key Features for E-commerce Agencies
Unified Client Accounts
Manage multiple projects, retainers, and billing structures per ecommerce client in a single consolidated view.
Ecommerce Build Templates
Pre-structured project templates for store builds, platform migrations, and redesigns with phased timelines and task dependencies.
Cross-Functional Team Management
Coordinate developers, designers, and marketers on shared client accounts with workload visibility and role-based assignment.
Multi-Model Billing
Support project fees, retainers, and hourly billing per client with consolidated monthly invoicing across all service lines.
Client Portal
Branded client dashboard showing build progress, retainer utilization, pending approvals, and all active service lines.
Revenue & Margin Analytics
Track profitability per client, per service line, and per project with blended margins across multi-service engagements.
Frequently Asked Questions
Can AgencyPro handle a client with both a store build project and an ongoing retainer?
Yes. AgencyPro supports multiple projects per client, each with its own billing model, timeline, and team assignments. A single client can have a fixed-price store build, a monthly SEO retainer, and hourly PPC management — all visible in one unified client view with consolidated invoicing.
How does AgencyPro handle ecommerce platform migrations?
Use AgencyPro's phased project templates to structure the migration — data audit, platform setup, content migration, design implementation, testing, and cutover. Each phase has dependencies, milestones, and assigned team members. Budget tracking monitors hours against the project estimate throughout.
We have 8 people across development, design, and marketing — is AgencyPro right for our size?
An 8-person cross-functional ecommerce agency is an ideal fit. You need the team coordination, multi-service client management, and flexible billing that Bonsai cannot provide, but you don't need enterprise-scale complexity. AgencyPro gives you the operational tools to run efficiently and continue growing.
What's the biggest operational improvement over Bonsai for ecommerce agencies?
The unified client view with multi-service management. Instead of managing separate Bonsai projects with no connection between them, AgencyPro shows all active work, billing, and team allocation for each client in one place. This unified view is transformative for agencies managing complex, multi-service ecommerce relationships.
Switching from Bonsai Is Easier Than You Think
Switching from Bonsai to AgencyPro is straightforward. Our team helps migrate your projects, client data, and workflows so nothing falls through the cracks. Most E-commerce teams are fully operational within a week.
Bonsai Alternatives for Other Industries
Other Alternatives for E-commerce Agencies
Learn more about AgencyPro for E-commerce Agencies
View the E-commerce Agencies use case page →Manage Complex Ecommerce Engagements Without Bonsai's Limits
Ecommerce agencies choose AgencyPro for multi-service client management, cross-functional team coordination, and flexible billing that scales with complexity.